Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS.

J. Proteome Res. 14 , 3912-23, (2015)

2015-09-04

Laser microdissection (LMD) was utilized for the separation of the yolk, follicular wall (granulosa and theca), and surrounding stromal cells of small white follicles (SWF) obtained from reproductively active domestic fowl. Herein, we provide an in situ prote...

Identification of Missing Proteins Defined by Chromosome-Centric Proteome Project in the Cytoplasmic Detergent-Insoluble Proteins.

J. Proteome Res. 14 , 3693-709, (2015)

2015-09-04

Finding protein evidence (PE) for protein coding genes is a primary task of the Phase I Chromosome-Centric Human Proteome Project (C-HPP). Currently, there are 2948 PE level 2-4 coding genes per neXtProt, which are deemed missing proteins in the human proteom...

Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress.

J. Proteome Res. 14 , 3982-95, (2015)

2015-09-04

"Dry eye" is a multifactorial inflammatory disease affecting the ocular surface. Tear hyperosmolarity in dry eye contributes to inflammation and cell damage. Recent research efforts on dry eye have been directed toward biomarker discovery for diagnosis, respo...

Linear Discriminant Analysis Identifies Mitochondrially Localized Proteins in Neurospora crassa.

J. Proteome Res. 14 , 3900-11, (2015)

2015-09-04

Besides their role as powerhouses, mitochondria play a pivotal role in the spatial organization of numerous enzymatic functions. They are connected to the ER, and many pathways are organized through the mitochondrial membranes. Thus, the precise definition of...

Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts.

J. Proteome Res. 14 , 3932-9, (2015)

2015-09-04

Bone marrow-derived human mesenchymal stem cells (BM-hMSCs) have the innate ability to migrate or home toward and engraft in tumors such as glioblastoma (GBM). Because of this unique property of BM-hMSCs, we have explored their use for cell-mediated therapeut...

Phosphoproteomic Analysis of Aurora Kinase Inhibition in Monopolar Cytokinesis.

J. Proteome Res. 14 , 4087-98, (2015)

2015-09-04

Cytokinesis is the last step of the cell cycle that requires coordinated activities of the microtubule cytoskeleton, actin cytoskeleton, and membrane compartments. Aurora B kinase is one of the master regulatory kinases that orchestrate multiple events during...

Protein Dynamics in Young Maize Root Hairs in Response to Macro- and Micronutrient Deprivation.

J. Proteome Res. 14 , 3362-71, (2015)

2015-08-07

Plants increase their root surface with root hairs to improve the acquisition of nutrients from the soil. The unicellular character of root hairs and their position at the root surface make them an attractive system to investigate adaptive processes of rhizod...

Comparative Shotgun Proteomic Analysis of Wastewater-Cultured Microalgae: Nitrogen Sensing and Carbon Fixation for Growth and Nutrient Removal in Chlamydomonas reinhardtii.

J. Proteome Res. 14 , 3051-67, (2015)

2015-08-07

Chlamydomonas reinhardtii was batch-cultured for 12 days under continuous illumination to investigate nitrogen uptake and metabolic responses to wastewater processing. Our approach compared two conditions: (1) artificial wastewater containing nitrate and ammo...

Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.

J. Proteome Res. 14 , 3252-62, (2015)

2015-08-07

Histone post-translational modifications (PTMs) are important regulators of chromatin structure and gene expression. Quantitative analysis of histone PTMs by mass spectrometry remains extremely challenging due to the complex and combinatorial nature of histon...

Distinct Protein Expression Profiles of Solid-Pseudopapillary Neoplasms of the Pancreas.

J. Proteome Res. 14 , 3007-14, (2015)

2015-08-07

Solid-pseudopapillary neoplasm (SPN) is an uncommon pancreatic tumor with mutation in CTNNB1 and distinct clinical and pathological features. We compared the proteomic profiles of SPN to mRNA expression. Pooled SPNs and pooled non-neoplastic pancreatic tissue...