Novel histone deacetylase 8 ligands without a zinc chelating group: Exploring an 'upside-down'binding pose

…, A Madriaga, H Bai, E Mendonca, H Abdelkarim…

Index: Vaidya, Aditya Sudheer; Neelarapu, Raghupathi; Madriaga, Antonett; Bai, He; Mendonca, Emma; Abdelkarim, Hazem; Van Breemen, Richard B.; Blond, Sylvie Y.; Petukhov, Pavel A. Bioorganic and Medicinal Chemistry Letters, 2012 , vol. 22, # 21 p. 6621 - 6627

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Citation Number: 12

Abstract

A novel series of HDAC8 inhibitors without a zinc-chelating hydroxamic acid moiety is reported. Photoaffinity labeling and molecular modeling studies suggest that these ligands are likely to bind in an 'upside-down'fashion in a secondary binding site proximal to the main catalytic site. The most potent ligand in the series exhibits an IC50 of 28μM for HDAC8 and is found to inhibit the deacetylation of H4 but not α-tubulin in SH-SY5Y cell line.