Brazilian Journal of Microbiology 2015-06-01

LAMP technology: Rapid identification of Brucella and Mycobacterium avium subsp. paratuberculosis.

Marcos D Trangoni, Andrea K Gioffré, María E Cerón Cucchi, Karina C Caimi, Paula Ruybal, Martín J Zumárraga, Silvio L Cravero

Index: Braz. J. Microbiol. 46 , 619-26, (2015)

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Abstract

In this study, we developed new sets of primers to detect Brucella spp. and M. avium subsp. paratuberculosis (MAP) through isothermal amplification. We selected a previously well-characterized target gene, bscp31, specific for Brucella spp. and IS900 for MAP. The limits of detection using the loop-mediated isothermal amplification (LAMP) protocols described herein were similar to those of conventional PCR targeting the same sequences. Hydroxynaphtol blue and SYBR Green(TM) allowed direct naked-eye detection with identical sensitivity as agarose gel electrophoresis. We included the LAMP-based protocol in a rapid identification scheme of the respective pathogens, and all tested isolates were correctly identified within 2 to 3 h. In addition, both protocols were suitable for specifically identifying the respective pathogens; in the case of Brucella, it also allowed the identification of all the biovars tested. We conclude that LAMP is a suitable rapid molecular typing tool that could help to shorten the time required to identify insidious bacteria in low-complexity laboratories, mainly in developing countries.