2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine

Modify Date: 2026-06-30 10:41:33

2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine Structure
2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine structure
Common Name 2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine
CAS Number 78636-53-0 Molecular Weight 259.23
Density 1.73 g/cm3 Boiling Point 495.4ºC at 760 mmHg
Molecular Formula C10H14FN3O4 Melting Point N/A
MSDS N/A Flash Point 253.4ºC

 Use of 2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine


2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine is a cytidine nucleoside analog. Cytidine analogs have a mechanism of inhibiting DNA methyltransferases (such as Zebularine, HY-13420), and have potential anti-metabolic and anti-tumor activities[1].

Summary: 4-Amino-1-(2-deoxy-2-fluoro-BETA-D-arabinofuranosyl)-5-methyl-2(1H)-pyrimidone (Chinese name), also known as 2'-fluoro-5-methylarabino-furanosylcytosine, with CAS number 78636-53-0, has a molecular formula of C10H14FN3O4 and a molecular weight of 259.23. For research-use only, not for medical or clinical usage.


 Names

This table lists Chinese names, IUPAC names and various aliases of this chemical substance.

Name 2'-fluoro-5-methylarabino-furanosylcytosine
Synonym More Synonyms

  Biological Activity

This table contains bioactivity, target information and biological‑assay experimental data of this compound.

Description 2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine is a cytidine nucleoside analog. Cytidine analogs have a mechanism of inhibiting DNA methyltransferases (such as Zebularine, HY-13420), and have potential anti-metabolic and anti-tumor activities[1].
Related Catalog
References

[1]. Gowher H, et al. Mechanism of inhibition of DNA methyltransferases by cytidine analogs in cancer therapy. Cancer Biol Ther. 2004 Nov;3(11):1062-8.  

 Chemical & Physical Properties

This table shows physicochemical parameters including melting point, boiling point, density, solubility and optical rotation. Missing data is marked as N/A.

Density 1.73 g/cm3
Boiling Point 495.4ºC at 760 mmHg
Molecular Formula C10H14FN3O4
Molecular Weight 259.23
Flash Point 253.4ºC
Exact Mass 275.09200
PSA 127.70000
Index of Refraction 1.674
InChIKey QZZJZXAWLQYJFK-JVZYCSMKSA-N
SMILES Cc1cn(C2OC(CO)C(O)C2F)c(=O)nc1N

 Precursor & DownStream

This table lists upstream starting materials and downstream derivative products related to this chemical.

Precursor  4

DownStream  1

 Bioassay

View more

This table contains target information, in‑vitro & in‑vivo assay data for this compound.

Name: Ratio of acyclovir EC50 to compound EC50 for Macacine herpesvirus 1 isolate MJ3 infec...
Source: ChEMBL
Target: Macacine alphaherpesvirus 1
External Id: CHEMBL1220399
Name: Antiherpetic activity against HSV-2
Source: ChEMBL
Target: Human alphaherpesvirus 2
External Id: CHEMBL694610
Name: Ratio of acyclovir EC50 to compound EC50 for HSV1 infected in african green monkey Ve...
Source: ChEMBL
Target: Human alphaherpesvirus 1
External Id: CHEMBL1220397
Name: Ratio of acyclovir EC50 to compound EC50 for HSV 2 infected in african green monkey V...
Source: ChEMBL
Target: Human alphaherpesvirus 2
External Id: CHEMBL1220396
Name: Ratio of ID50/ID90 in HSV-1 in fected cells
Source: ChEMBL
Target: Human alphaherpesvirus 1
External Id: CHEMBL850433
Name: Antiherpetic activity against HSV-1
Source: ChEMBL
Target: Human alphaherpesvirus 1
External Id: CHEMBL883993
Name: Ratio of ID50/ID90 in HSV-2 infected cells
Source: ChEMBL
Target: Human alphaherpesvirus 2
External Id: CHEMBL850437
Name: Ratio of acyclovir EC50 to compound EC50 for Macacine herpesvirus 1 isolate A4 infect...
Source: ChEMBL
Target: Macacine alphaherpesvirus 1
External Id: CHEMBL1220407
Name: Ratio of acyclovir EC50 to compound EC50 for Macacine herpesvirus 1 isolate A5 infect...
Source: ChEMBL
Target: Macacine alphaherpesvirus 1
External Id: CHEMBL1220406
Name: Cytotoxic activity against vero cells was evaluated.
Source: ChEMBL
Target: Vero
External Id: CHEMBL821164
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 Synonyms

This table collects all English aliases, systematic names and CAS‑related synonyms of the compound.

2(1H)-Pyrimidinone,4-amino-1-(2-deoxy-2-fluoro-b-D-arabinofuranosyl)-5-ethyl

  | FAQ

This section contains frequently‑asked‑questions about this compound, including basic parameters, properties, storage conditions and corresponding answers.

Q: What English synonyms does 2'-fluoro-5-methylarabino-furanosylcytosine have?
A: English synonyms of 2'-fluoro-5-methylarabino-furanosylcytosine: 2(1H)-Pyrimidinone,4-amino-1-(2-deoxy-2-fluoro-b-D-arabinofuranosyl)-5-ethyl.
Q: What is the molecular formula of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: Molecular formula of 2'-fluoro-5-methylarabino-furanosylcytosine is C10H14FN3O4.
Q: What is the Chinese name of 78636-53-0?
A: Chinese name of 78636-53-0 is 78636-53-0.
Q: What is the polar surface area (PSA) of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: Polar surface area (PSA) of 2'-fluoro-5-methylarabino-furanosylcytosine is 127.70000.
Q: What are the uses of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: Main uses of 2'-fluoro-5-methylarabino-furanosylcytosine: 2′-Deoxy-2′-fluoro-5-methyl-arabinocytidine is a cytidine nucleoside analog. Cytidine analogs have a mechanism of inhibiting DNA methyltransferases (such as Zebularine, HY-13420), and have potential anti-metabolic and anti-tumor activities[1].
Q: What are the downstream products of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: Related downstream products(CAS) of 2'-fluoro-5-methylarabino-furanosylcytosine: 69256-17-3.
Q: What is the CAS number of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: CAS number of 2'-fluoro-5-methylarabino-furanosylcytosine is 78636-53-0.
Q: What is the English name of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: The English name of 2'-fluoro-5-methylarabino-furanosylcytosine is 2'-fluoro-5-methylarabino-furanosylcytosine.
Q: What is the InChIKey of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: InChIKey of 2'-fluoro-5-methylarabino-furanosylcytosine is QZZJZXAWLQYJFK-JVZYCSMKSA-N.
Q: What is the SMILES notation of 2'-fluoro-5-methylarabino-furanosylcytosine?
A: SMILES notation of 2'-fluoro-5-methylarabino-furanosylcytosine is Cc1cn(C2OC(CO)C(O)C2F)c(=O)nc1N.

 factory

This table lists manufacturers and suppliers of this compound, including vendor names and product supply reference information.

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