5-Ethynyl uridine

Modify Date: 2026-07-06 11:00:11

5-Ethynyl uridine Structure
5-Ethynyl uridine structure
Common Name 5-Ethynyl uridine
CAS Number 69075-42-9 Molecular Weight 268.22300
Density N/A Boiling Point N/A
Molecular Formula C11H12N2O6 Melting Point N/A
MSDS N/A Flash Point N/A

 Use of 5-Ethynyl uridine


5-Ethynyluridine (5-EU) is a potent cell-permeable nucleoside can be used to label newly synthesized RNA. 5-Ethynyluridine can be used for isolation and sequencing of nascent RNA from neuronal populations in vivo. 5-Ethynyluridine can be used to identify changes in transcription in vivo in nervous system disease models[1][2].

 Names

Name 5-ethynyluridine
Synonym More Synonyms

 5-Ethynyl uridine Biological Activity

Description 5-Ethynyluridine (5-EU) is a potent cell-permeable nucleoside can be used to label newly synthesized RNA. 5-Ethynyluridine can be used for isolation and sequencing of nascent RNA from neuronal populations in vivo. 5-Ethynyluridine can be used to identify changes in transcription in vivo in nervous system disease models[1][2].
Related Catalog
In Vivo 5-Ethynyluridine (75 mM in PBS for 1 µl; intracerebellar injection ) shows a labeling of central nervous system cells in mouse[1]. 5-Ethynyluridine (330-750 µMol/g; i.p.) results in in labelling of nascent RNA in cells of multiple organs and tissues, but not in the central nervous system in mouse[1].
References

[1]. Van't Sant LJ, et al. In vivo 5-ethynyluridine (EU) labelling detects reduced transcription in Purkinje cell degeneration mouse mutants, but can itself induce neurodegeneration. Acta Neuropathol Commun. 2021 May 21;9(1):94.

[2]. Jao CY, et al. Exploring RNA transcription and turnover in vivo by using click chemistry. Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15779-84.

 Chemical & Physical Properties

Molecular Formula C11H12N2O6
Molecular Weight 268.22300
Exact Mass 268.07000
PSA 124.78000
InChIKey QCWBIPKYTBFWHH-FDDDBJFASA-N
SMILES C#Cc1cn(C2OC(CO)C(O)C2O)c(=O)[nH]c1=O

 Synthetic Route

~%

5-Ethynyl uridine Structure

5-Ethynyl uridine

CAS#:69075-42-9

Learn More
Literature: Chemical Communications, , vol. 49, # 30 p. 3128 - 3130

~%

5-Ethynyl uridine Structure

5-Ethynyl uridine

CAS#:69075-42-9

Learn More
Literature: Chemical Communications, , vol. 49, # 30 p. 3128 - 3130

~%

5-Ethynyl uridine Structure

5-Ethynyl uridine

CAS#:69075-42-9

Learn More
Literature: Chemical Communications, , vol. 49, # 30 p. 3128 - 3130

~%

5-Ethynyl uridine Structure

5-Ethynyl uridine

CAS#:69075-42-9

Learn More
Literature: Chemical Communications, , vol. 49, # 30 p. 3128 - 3130

~%

5-Ethynyl uridine Structure

5-Ethynyl uridine

CAS#:69075-42-9

Learn More
Literature: Chemical Communications, , vol. 49, # 30 p. 3128 - 3130

 5-Ethynyl uridineBioassay

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Name: Antibacterial activity against Staphylococcus aureus ATCC 25923 assessed as 100% redu...
Source: ChEMBL
Target: Staphylococcus aureus
External Id: CHEMBL3863160
Name: Antibacterial activity against Enterococcus faecalis ATCC 29212 assessed as 100% redu...
Source: ChEMBL
Target: Enterococcus faecalis
External Id: CHEMBL3863161
Name: Antibacterial activity against Escherichia coli ATCC 25922 assessed as 100% reduction...
Source: ChEMBL
Target: Escherichia coli
External Id: CHEMBL3863162
Name: Antibacterial activity against clinical isolates of Salmonella typhimurium assessed a...
Source: ChEMBL
Target: Salmonella enterica subsp. enterica serovar Typhimurium
External Id: CHEMBL3863163
Name: Growth inhibition of Staphylococcus aureus ATCC 25923 at 100 ug/ml after 6 days in pr...
Source: ChEMBL
Target: Staphylococcus aureus
External Id: CHEMBL3863156
Name: Growth inhibition of Staphylococcus aureus ATCC 25923 assessed as fractional inhibito...
Source: ChEMBL
Target: Staphylococcus aureus
External Id: CHEMBL3863157
Name: Growth inhibition of Enterococcus faecalis ATCC 29212 at 100 ug/ml after 6 days in pr...
Source: ChEMBL
Target: Enterococcus faecalis
External Id: CHEMBL3863158
Name: Growth inhibition of Enterococcus faecalis ATCC 29212 assessed as fractional inhibito...
Source: ChEMBL
Target: Enterococcus faecalis
External Id: CHEMBL3863159
Name: Antibacterial activity against Pseudomonas aeruginosa ATCC 13048 assessed as 100% red...
Source: ChEMBL
Target: Pseudomonas aeruginosa
External Id: CHEMBL3863164
Name: Cytotoxicity against African green monkey Vero cells assessed as decrease in cell via...
Source: ChEMBL
Target: NON-PROTEIN TARGET
External Id: CHEMBL3863135
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 Synonyms

1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-5-ethynylpyrimidine-2,4(1H,3H)-dione
5-ETHYNYL URIDINE
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